GitHub - 0xyydeca/CNI: 🧬 CNI is a Python toolkit for analyzing and visualizing RNA-seq data with a focus on cellular networks and pathway analysis. Create volcano plots, heatmaps, PCA plots, and more from Excel datasets. 🔍📊🐍

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CNI

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🧬 CNI is a Python toolkit for analyzing and visualizing RNA-seq data with a focus on cellular networks and pathway analysis. Create volcano plots, heatmaps, PCA plots, and more from Excel datasets. 🔍📊🐍

bioinformatics cellular-networks cluster-analysis data-visualization excel-data genomics heatmap matplotlib networkx pandas pathway-analysis pca plotly python rna-seq seaborn statistical-analysis volcano-plot

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Name		Name	Last commit message	Last commit date
Dose Response		Dose Response
Excel		Excel
Genes		Genes
.gitignore		.gitignore
RNAseq LogFC.xlsx		RNAseq LogFC.xlsx
clustered_heatmap.png		clustered_heatmap.png
custom_barplot.py		custom_barplot.py
custom_grouped_barplot.png		custom_grouped_barplot.png
excel_reader.py		excel_reader.py
gene_barplot_from_excel.png		gene_barplot_from_excel.png
gene_barplot_from_excel.py		gene_barplot_from_excel.py
genes.txt		genes.txt
graph_examples.py		graph_examples.py
group_comparison.png		group_comparison.png
group_statistics.csv		group_statistics.csv
pathway_enrichment.png		pathway_enrichment.png
pathway_statistics.csv		pathway_statistics.csv
requirements.txt		requirements.txt
rnaseq_boxplot.png		rnaseq_boxplot.png
rnaseq_heatmap.png		rnaseq_heatmap.png
rnaseq_pca.png		rnaseq_pca.png
volcano_plot.png		volcano_plot.png

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